PF12789 - Phage tail repeat like

PF12789 Protein family information

A complete search has been done using H[T|S|G]H Motif all the retrieved information is in here

A2GID0

A2GID0 Interpro sequence information

Sequence:

>tr|A2GID0|A2GID0_TRIVA Phage tail fiber repeat family protein OS=Trichomonas vaginalis G3 OX=412133 GN=TVAG_471250 PE=4 SV=1
MSNETASMREIQHNRQLIMQALNKNTTNFSNYSKISETLKDGNLKLTLNPITDEFLFQDN
KNNTVCINPTKGTLNEKPINELLLKADVDNKADKEYVDDAIAKEEERANNAYATKEHTHP
ELADKTYVDNKMSSEVTRAENEYSKKTHIHYINQIPSLKETLETKADKTHTHSISDITNL
QETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSI
SDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDV
EHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETL
NRKSDVGHTHTSSEITDLNVSLENKADKTYVNEIYQSLIGTKILKLLLVTFLSMKKINIL
DGSWYSP

MRF results:

Region 1: 53-140, 31 aa length,3 units, TRUST 0.56
DEFLFQ---DNK-NNTVCINPTKGTLNEKPI
NELLLKADVDNK-ADKEYVDDAIAKEEERAN
NAYATKEHTHPELADKTYVDNKMSSEVTRAE

Region 2: 159-378, 22 aa length, 10 units, TRUST 1.0
KETLETKADKTHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVGHTHTSSEITDL

TAPAS results:

tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,structured domain,CATH,120,408,3.80.10.10/FF/343
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,1,20
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,30,34
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,66,72
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,78,85
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,94,378
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,66,81
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,156,176
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,178,198
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,200,220
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,222,242
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,244,264
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,266,286
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,288,308
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,310,330
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,332,352
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,354,377
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,142,201,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,191,245,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,232,289,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,279,333,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,324,377,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus ordered region,TAPASS,35,65
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus ordered region,TAPASS,120,426
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus disordered region,TAPASS,1,34
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus disordered region,TAPASS,66,119

Alphafold results - spectrum b

_images/A2GID0alphafold.png

Alphafold results - units from MRF

_images/A2GID0alphafoldUnits.png

Alphafold results - trimer

_images/A2GID0alphafoldtrimer.png _images/A2GID0trimer.png

Alphafold results A2GID0

Alphafold results trimer A2GID0

A3XEN5

PFAM Repeat region 103-158

A3XEN5 Interpro sequence information

Sequence:

>tr|A3XEN5|A3XEN5_9RHOB Prophage MuMc02, head decoration protein, putative OS=Roseobacter sp. MED193 OX=314262 GN=MED193_12628 PE=4 SV=1
MANTIQLKRRVSGNAGAPAALKSGEVAHNEVDDTLYIGKGDDGGGNATSIVAIAGSGGFV
AKTGTQTIAGKKTFSLVPTASQDAAAGSDLVRKSQLDTLLGGKANTSHSHAIADVTGLQG
ALDGKAAVSHDHTAAEISDSTSAGRTLLKAADVAAQHTALGLGTAALMSSTAFAAAAHGH
AISDVSGLQTALNGKAPLASPSFTGTPAAPTAAGGTNTTQIATTAFVQSAIASFGAGDML
KATYDSDNDGKVDAAELADAVAWTGVTGKPATFPPSAHNHPISQVTGLQSALDAKAPKVS
PTFTGTPTAPTAAGGTSNTQIATTAFVSAAIAALIDAAPGAMDTLNELAAALGDDPDFAT
TVTNGLAGKLEKTSNLSDLTNAATARSNLGLGSMATQAANNVAITGGSISGIALDGGTF

MRF results:

Region 1: 16-380, 109 aa length,5 units, TRUST 0.99
GAPAA-LKS-GEVAHNEVDDTLYIGKGD-----D-----------------GG---GNATSIVA----------IAGS--GGF--VAK-T-GTQT-IAGKK-----TFS
LVPTASQDAAAGSDLVRKSQ---LDTLL-----G-----------------GK---AN-------------------TSHSHA--IADVT-GLQGALDGKAA-VSHDHT
AAEIS-DSTSAGRTLLKAADVAAQHTAL-----GL----------------GT---AALMSSTA----------FAAAAHGHA--ISDVS-GLQTALNGKAPLASPSFT
GTPAA-PTAAGGTNTTQIATTAFVQSAI-----ASFGAGDMLKATYDSDNDGKVDAAELADAVAWTGVTGKPATFPPSAHNHP--ISQVT-GLQSALDAKAPKVSPTFT
GTPTA-PTAAGGTSNTQIATTAFVSAAIAALIDA-----------------AP---GAMDTLNE----------LAAALGDDPDFATTVTNGLAGKLE-KTSNLS-DLT

TAPAS results:

tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  16      24
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  32      35
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  129     136
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  199     219
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  268     291
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  296     317
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  362     365
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       functional domain       PFAM    103     158     PF12789.8
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus ordered region        TAPASS  36      267
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus ordered region        TAPASS  318     418
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus disordered region     TAPASS  1       35
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus disordered region     TAPASS  268     317
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       eukaryotic SLiMs        ELM     9       15      MOD_PKA_1
_images/A3XEN5tapass.jpg

Alphafold results - spectrum b

_images/A3XEN5alphafold.png

Alphafold results - units from MRF

_images/A3XEN5alphafoldUnits.png

Alphafold results - trimer

_images/A3XEN5alphafoldtrimer.png _images/A3XEN5alphafoldtrimerUnits.png

Alphafold results A3XEN5

Alphafold results trimer A3XEN5