Cases To Reviewed

PF00399 - Yeast PIR protein repeat

PF00399 Protein family information

A0A0D1Z8C3

A0A0D1Z8C3 Interpro sequence information

Sequence:

>tr|A0A0D1Z8C3|A0A0D1Z8C3_EXOME Covalently-linked cell wall protein OS=Exophiala mesophila OX=212818 GN=PV10_07613 PE=4 SV=1
MQSFALLALVLGVCATPFPQGVTEAIPPDSPPPEGCKTTVSETLELYVTNVTTSTKRSLS
SRQLDGPLKLTLTDSVLKDQAGRTGYIAANYQFQFDDPPQAGAIYTSGFSYCANGSFALG
GSAIFYQCLSGNFYNLYDRDWAEHCNAVYFLGYSGSSSAPAASQASDGQPVATSNAPVSQ
ISDGQPQASTGAAPVTQISDGQPQAPTGAPVTQISDGQPQAPTGAPVTQISDGQPQAPTG
KPVTQISDGQPQAPTGAPVTQISDGQPQAPTGAPVTQISDGQPQAPTGAPVTQISDGQPQ
APTGKPVTQISDGQPQAPTGAPVTQISDGQPQAPTGAPVTQISDGQPQAPTGAPVTQISD
GQPQAPTGAPVTQISDGQPQAPTGAAVTQISDGQPQAPTGSGASPATFTGAAHHDGLSGG
LALAAGIAGVVVLL

MRF results:

Region 1: 160-397, 17 aa length,      15 units

PA----ASQASDGQPVA
TSN-APVSQISDGQPQA
STGAAPVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-KPVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-KPVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-APVTQISDGQPQA
PTG-AAVTQISDGQPQA

TAPAS results:

_images/A0A0D1Z8C3.png

Alphafold results complete sequence - spectrum b

_images/AF-A0A0D1Z8C3complete.png

AlphaFold results A0A0D1Z8C3

PF00402 - Calponin family repeat

PF00402 Protein family information

K1R832

Repeat Units annotated : 52-76, 92-116, 132-156 , 181-196, 266-289, 305-328, 344-367, 383-406, 422-445, 461-484, 500-523

K1R832 Interpro sequence information

Sequence:

>tr|K1R832|K1R832_CRAGI Protein unc-87 OS=Crassostrea gigas OX=29159 GN=CGI_10025379 PE=3 SV=1
MLTLSERSRIDGTIIRKAQRNGFQGETAGNKPVEKNVRDFSYAQLKSGHGTVGLQAGTNK
LDSQKGMTAMGAVRHISDIRADKFDKTSEGVITLQAGTNQWASQKGMTAIGAVRHISDLK
VSQACQEGQATISLQSGTNKFDSQKGTRGFGAVRHISDIRADDLLLEGTDKISPVISYTG
GDSQKGMRGFGAQRHVSDIKITDLAEEYCKKTGFKPPKPVIQSETTEQTPVAQRNSFNGP
VIGSKPTEKHIVHFTEEQKRAGHGIIGLQAGTNKCASQKGMKIGAARHIADIKADDLDRA
GQGIIGAQAGTNQYASQKGMKIGGVRHIADIRADEMSQEGQGIVGAQAGTNKFASQSGMS
FGAVRHIADIRADTASQEGQGVIGLQSGSNKGASQSGMSFGGRRHVSDIRVDDMSQDSQG
IVGGQSGTNKFANQSGMSFGAVRHIADIRADDLDQQGQGTVGLQSGSNKFASQSGMSFGS
VRHVADIRADQYSQEGAGTIGLQYGSNQGASQAGMNFGKGRGVADIPIQDLAESMGYTQY

MRF results:

Region 1: 54-172, 40 aa length, 3 units
LQAGTNKLDSQKGMTAMGAVRHISDIRADKFDKTSEGVIT
LQAGTNQWASQKGMTAIGAVRHISDLKVSQACQEGQATIS
LQSGTNKFDSQKGTRGFGAVRHISDIRADDLLLEGTDKI-

Region 2: 264-535, 39 aa length, 7 units
GIIGLQAGTNKCASQKGMKIGAARHIADIKADDLDRAGQ
GIIGAQAGTNQYASQKGMKIGGVRHIADIRADEMSQEGQ
GIVGAQAGTNKFASQSGMSFGAVRHIADIRADTASQEGQ
GVIGLQSGSNKGASQSGMSFGGRRHVSDIRVDDMSQDSQ
GIVGGQSGTNKFANQSGMSFGAVRHIADIRADDLDQQGQ
GTVGLQSGSNKFASQSGMSFGSVRHVADIRADQYSQEGA
GTIGLQYGSNQGASQAGMNFGKGRGVADIPIQDLA-ESM

TAPAS results:

tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,structured domain,CATH,12,52,1.10.418.10/FF/4730
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,structured domain,CATH,225,266,1.10.418.10/FF/4730
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,structured domain,CATH,433,484,2.40.50.140/FF/37133
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,15,40
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,53,67
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,132,147
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,186,192
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,215,256
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,265,269
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,300,319
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,325,349
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,366,370
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,378,429
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,448,468
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,498,501
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,IUPred,513,516
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,BISMMpredictor,16,39
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,BISMMpredictor,133,151
tr_K1R832_OX=29159_GN=CGI_10025379_PE=3_SV=1,disordered region,BISMMpredictor,384,399

Alphafold results - spectrum b

_images/K1R832alphafold.png

Alphafold results - units from MRF

_images/K1R832alphafoldUnits.png

Alphafold results K1R832

PF00624 - Flocculin repeat

PF00624 Protein family information

A7TTI5

A7TTI5 Interpro sequence information Sequence:

>tr|A7TTI5|A7TTI5_VANPO Uncharacterized protein (Fragment) OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=Kpol_249p1 PE=4 SV=1
MKHFTRLLTFLNFVLFACSLSNHENNQALSLSELIDHEAILEGNTALVGDNPKSKLHSEK
KLLSIPLNINQNESIYTSVPSTKNQTYFISDHLATNVKNVDKKDITIKSNDISIITIRTQ
NLNILAETTSTELTWVTGHNGIESKLFIYYIEYPVDHFSFTFIRPMTVNNLEKRLVENED
ISSSSIVKPIVTESTKTIVNTITKSDNALVVETTYIVYSRSPYTSTNSKKTYWTGSYTTT
TKTEITTYIGTNGGVTTETIYFIATPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAF
ETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAFETTSFTYWTGSTANT
LSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAF
ETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANT
LSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAF
ETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAFETTSFTYWTGSTANT
LSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIVETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAF
ETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANT
LSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIVETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAF
ETTSFTYWTGSTANTLSTVTTTFTGTDGIETTETIYIVETPTTAFETTSYTYWTGSTANT
LSTVTTTFTGTDGIETTETIYIVETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTDGIE
TTETIYIV

MRF results:

Region 1: 207-1197, 60 aa length, 47 units

NALVVETTYIVYSRSPYTSTNSKK-TYWTGSYTTTTKTEITTYIGTN
GGVTTETIYFI--ATPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSYTYWTGSTANTLSTVTTTFTGTD
GIETTETIYIV--ETPTTAFETTSFTYWTGSTANTLSTVTTTFTGTD

Alphafold results - spectrum b

_images/A7TTI5alphafold.png

Alphafold results - units from MRF

_images/A7TTI5alphafoldUnits.png

Alphafold results A7TTI5

PF00880 - Nebulin repeat

PF00880 Protein family information

A0A0S7IV57

PFAM repeat units: 68-95, 103-129

A0A0S7IV57 Interpro sequence information

Sequence:

>tr|A0A0S7IV57|A0A0S7IV57_9TELE NEBU (Fragment) OS=Poeciliopsis prolifica OX=188132 GN=NEBU PE=4 SV=1
SNDVVQARLAYDLQSDAVYKADLKWLQGLGWVPIGSLDVEKAKKAAEVLSDRKYRQHPST
VKFTSPIDAMNIVLAKSNAMTMNKRLYTEAWENEKTKLHIKPDTPEIVLSQQNAINMSKK
LYKQGFEETISKGYFLPPDAVSVKAAKTSRDIISDYKYKTG

MRF results:

Region 1: 3-141, 43 aa length, 4 units
DVVQARLAYDLQSDA--VYK---A---DLKWLQGLGWVPIGSL
DVEKAKKAAEVL--SDRKYR---Q---HPSTVKFTS--PIDAM
NIVLAKSNAMTMN--KRLYTEAWE---NEKTKLHIK--P-DTP
EIVLSQQNAINM--SKKLYK---QGFEETISKGYFL--PPDAV

TAPAS results:

tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,structured domain,CATH,13,86,3.30.70.330/FF/43532
tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,structured domain,CATH,104,160,3.30.1370.30/FF/2311
tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,disordered region,BISMMpredictor,49,64
tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,functional domain,PFAM,68,95,PF00880.19
tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,functional domain,PFAM,103,129,PF00880.19
tr_A0A0S7IV57_OX=188132_GN=NEBU_PE=4_SV=1,consensus ordered region,TAPASS,1,165

Alphafold results - spectrum b

_images/A0A0S7IV57alphafold.png

Alphafold results - units from MRF

_images/A0A0S7IV57alphafoldUnits.png

AlphaFold results monomer AlphaFold results dimer AlphaFold results trimer

PF00904 - Involucrin repeat

P14708

PFAM Repeat region: 156-165, 166-175 ….., 783-792

P14708 Interpro sequence information

Sequence:

>sp|P14708|INVO_PONPY Involucrin OS=Pongo pygmaeus OX=9600 GN=IVL PE=2 SV=1
MSQQHTLPVTLSPALSQELLKTVPPPVNTQQEQMKQPTPLPPPCQKVPVELPVEVPSKQE
EKHMTAVKGLPEQECEQQQQEPQEQELQQQHWEQHEEHQKAENPEQQLKQEKAQRDQQLN
EQLEEEKKLLDQRLDQELVKRDEQLGMKKEQLLELPEQQEQHLKHLEQQEGQLELPEQQE
GQLKHLEQQEGQLKHLEQQEGQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLKHLDQQE
GQLKHLDQQEGQLKHLDQQEGQLKHLDQQEGQLELPEQQEGQLKHLEQQEGQLKHLEHEE
GQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLELPEQQEGQLKHLEQQEGQLKHLEHQK
GQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLELPEQQEGQLKHLEQQEGQLKHLEHQE
GQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLKHLDQQEKQLELPEQQVGQLKHLEQQE
GQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLELPEQQEGQLKHLEQQEGQLKHLEHQE
GQLEVPEEQVGQLKYLEQQEGQLKHLDQQEGQLKHLDQQEKQLELPEQQVGQLKHLEQQE
GQLEHLEGQEGQLEHLEHQEGQLGLPEQQVWQLKQLEKQEGQPKNLEEEEGQLKHLVQQE
GQLEQQEGQVEHLEEQVGQLKHLEEQEGQLKYLEQQQGQLEVPEQQVGQPKHLEQEEKQL
ELPEQQEGQLKHLEKQEAQLELPEQQVGQPKHLEQQEKQLEHPEQKDGQLKHLEQQEGQL
KNLEQQKGQLEQPVFAPAPGQVQDIQPALPTKGEVLLPVEQQQQKQEVQWPPKHK

MRF results:

Region 1: 703-780, 20 aa length, 4 units, 1.0 tally,Treks
PEQQVGQPKHLEQEEKQLEL
PEQQEGQLKHLEKQEAQLEL
PEQQVGQPKHLEQQEKQLEH
PEQKDGQLKHLEQQEGQL--

Region 2: 167-643, 17 aa length, 47 units, 0.94 tally,Treks
EQQEGQLELP-------
EQQEGQLKHL-------
EQQEGQLKHL-------
EQQEGQLEVPE------
-EQVGQLKYLEQQ----
---EGQLKHLDQQEG--
-----QLKHLDQQEG--
-----QLKHLDQQEG--
-----QLKHLDQQEG--
-----QLKHLDQQEG--
-----QLELPEQQEG--
-----QLKHLEQQEG--
-----QLKHLEHEEG--
-----QLEVPEEQVG--
-----QLKYLEQQEG--
-----QLKHLDQQEG--
-----QLELPEQQEG--
-----QLKHLEQQEG--
-----QLKHLEHQKG--
-----QLEVPEEQVG--
-----QLKYLEQQEG--
-----QLKHLDQQEG--
-----QLELPEQQEG--
-----QLKHLEQQEG--
-----QLKHLEHQEG--
-----QLEVPEEQVG--
-----QLKYLEQQEG--
-----QLKHLDQQEG--
-----QLKHLDQQEK--
-----QLELPEQQVG--
-----QLKHLEQQEG--
-----QLEVPEEQVG--
-----QLKYLEQQEG--
-----QLKHLDQQEG--
-----QLELPEQQEG--
-----QLKHLEQQEG--
-----QLKHLEHQEG--
-----QLEVPEEQVG--
-----QLKYLEQQEG--
-----QLKHLDQQEG--
-----QLKHLDQQEK--
-----QLELPEQQVG--
-----QLKHLEQQEG--
-----QLEHLEGQEG--
-----QLEHLEHQEG--
-----QLGLPEQQVW--
-----QLKQLEKQEGQP


Region 2: 658-694, 20 aa length, 2 units, 0.77 tally,TRUST
QQEGQL---EQQEGQVEHLE
EQVGQLKHLEEQEGQLKYLE

TAPAS results:

sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,structured domain,CATH,82,308,3.80.10.10/FF/106867
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,structured domain,CATH,398,551,3.80.10.10/FF/106867
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,IUPred,1,624
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,IUPred,632,835
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,21,48
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,70,133
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,654,675
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,677,694
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,723,756
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,disordered region,BISMMpredictor,765,820
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,functional domain,PFAM,1,69,PF10583.10
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,consensus ordered region,TAPASS,83,308
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,consensus ordered region,TAPASS,399,551
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,consensus disordered region,TAPASS,1,82
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,consensus disordered region,TAPASS,309,398
sp_P14708_OX=9600_GN=IVL_PE=2_SV=1,consensus disordered region,TAPASS,552,861

Alphafold results - spectrum b

_images/P14708alphafold.png

Alphafold results - units from MRF

_images/P14708alphafoldUnits.png

AlphaFold results P14708

PF02218 - Repeat in HS1/Cortactin

PF02218 Protein family information

B3RT04

PFAM repeat regions: 83-118, 120-155, 157-192, 194-229, 231-266, 268-303

B3RT04 Interpro sequence information

Sequence:

>tr|B3RT04|B3RT04_TRIAD Src substrate cortactin OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_21918 PE=4 SV=1
MWRAGVDTKFSTTESPEDDDWETDPDFVNDVTEEEQRFGSKTVEGSGSQRVLDMNKLRDD
VKDSDKKSKEGKLFHVTPKYSYGYGGQFGVQKDRMDKSAVSNSYQYVPEKHSSQTDFKQG
FGGKFGIQKDRQDKSAVGYDYSEKTALHSSQKDYSKGFGGKFGVQNDRQDKSAVGFDYTE
KTALHSSQKDYSKGFGGKFGVEKDKQDKSAVGFDYAEKNALHSSQKDYSKGFGGAFGVEK
DKQDKSAESWSYVGKSELHQSQKDYSKGFGGKFGVETEKQDKSAENWSYVGKNELHESQK
DYSRGFGGKFGVESDRQDKVW

MRF results:

Region 1: 80-301, 37 aa length, 6 units, TRUST 1.0
YSYGYGGQFGVQKDRMDKSAVSNSYQYVPEKHSSQTD
FKQGFGGKFGIQKDRQDKSAVGYDYSEKTALHSSQKD
YSKGFGGKFGVQNDRQDKSAVGFDYTEKTALHSSQKD
YSKGFGGKFGVEKDKQDKSAVGFDYAEKNALHSSQKD
YSKGFGGAFGVEKDKQDKSAESWSYVGKSELHQSQKD
YSKGFGGKFGVETEKQDKSAENWSYVGKNELHESQKD

TAPAS results:

tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,structured domain,CATH,90,161,1.20.1710.10/FF/31
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,5,70
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,99,109
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,121,124
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,138,142
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,158,161
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,249,253
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,IUPred,284,290
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,5,27
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,29,51
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,55,73
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,107,126
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,147,163
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,184,200
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,253,274
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,disordered region,BISMMpredictor,290,311
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,83,117,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,120,155,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,157,192,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,194,229,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,231,266,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,268,303,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,functional domain,PFAM,305,319,PF02218.16
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,consensus ordered region,TAPASS,91,161
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,consensus ordered region,TAPASS,201,248
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,consensus disordered region,TAPASS,1,90
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,consensus disordered region,TAPASS,162,200
tr_B3RT04_OX=10228_GN=TRIADDRAFT_21918_PE=4_SV=1,consensus disordered region,TAPASS,249,321

Alphafold results - spectrum b

_images/B3RT04alphafold_.png

Alphafold results - units from MRF

_images/B3RT04alphafoldUnits_.png

Alphafold results - spectrum b of the repeat region

_images/B3RT04alphafold.png

AlphaFold results B3RT04

PF03057 - DUF236 repeat

A0A7W1P561

A0A7W1P561 Interpro sequence information

Sequence:

>tr|A0A7W1P561|A0A7W1P561_9BACT DUF547 domain-containing protein OS=Acidobacteria bacterium OX=1978231 GN=H0X67_00305 PE=4 SV=1
MKTTVLCASAAIGAILLVPAAPAVTAVMADGFDHEYQTLAGVLSKQVKYPRVDYAALKAD
RVALDRAVAEFDAPAARDESGWPRERRLAFWLNAYNAFTLRAIVDHYPIRGGWFTIHPRN
SIRQIDGVWTDLTWRAAGRTVTLDGIEHGIIRPTFKDARIHYAVNCASISCPPLAAVPYR
ASTLDAQLDEAGRRFLASPVGLRVDGETLRVSSIFKWYGEDFLDDYAPLVPGSGDRQERA
ILGAIVKHGPAEAATLARTGRPAIRFLSYDWSLNDIE

MRF results:

This protein does not have validated tandem repeats

TAPAS results:

tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,peptide signal,SignalP,1,26,
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,transmembrane region,TMHMM,5,27,
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,functional domain,PFAM,19,42,PF03057.15
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,functional domain,PFAM,81,196,PF04784.15
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,consensus ordered region,TAPASS,1,277,
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,amyloidogenic region,Pasta,88,104,
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,amyloidogenic region,Tango,88,100,
tr_A0A7W1P561_A0A7W1P561_9BACT_DUF547_domain_containing_protein_OS=Acidobacteria_bacterium_OX=1978231_GN=H0X67_00305_PE=4_SV=1,amyloidogenic region,Tango,240,246,

Alphafold results - spectrum b

_images/A0A7W1P561alphafold.png

Alpha fold results A0A7W1P561

PF03991 - Copper binding octapeptide repeat

PF03991 Protein family information

Q7KYZ4

Q7KYZ4 Interpro sequence information

Sequence:

>tr|Q7KYZ4|Q7KYZ4_HUMAN Prion protein (Fragment) OS=Homo sapiens OX=9606 GN=prion protein/ PrP PE=4 SV=1
PQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG
GGWGQPHGGGWGQPHGGGWGQPHGGGWGQ

MRF results:

Region 1: 10-89,8 length,10 units,Trust 1.0

PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ
PHGGGWGQ

bfactor alpha fold model 33.50000 to 52.16000

_images/Q7KYZ4bfactor.png _images/Q7KYZ4.png

Q7KYZ4 AlphaFold

PF14585 - CagY type 1 repeat

PF14585 Protein family information

M3LCL2

M3LCL2 Interpro sequence information

Sequence:

>tr|M3LCL2|M3LCL2_HELPX DC-EC repeat protein (Fragment) OS=Helicobacter pylori GAM105Ai OX=1159022 GN=HMPREF1394_01765 PE=4 SV=1
SSDNHLDNPTETKTQETKTHFDEDKLEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVII
LFSRSIFHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFND
DPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDC
IKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEI
REKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDE
ERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEARKKLEQQVLD
CLKNAKTDEERKKCLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAR
KLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK
NEAERKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRV
YLDCVSKAKNEAERKECEKLLTPEARKLLENQALDCLKNAKTDEERKECLKDLPKDLQKK
VLAKESVRVYLDCVSKA

MRF results:

Region 1: 468-605,69 aa length,2 units,T-REKS 1

SVKAYLDCVSQAKNEAERKECEKLLTPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKE
SVRVYLDCVSKAKNEAERKECEKLLTPEARKLLENQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKE

Region 2: 146-435,87 aa length,4 units,TRUST 0.99

ECISNGGNYEE---CLK-L--I---KDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVA-------L
DCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIE--RLKQQ----A-------L
DCLKNAKTDEERNECLKNI--P---QDLQKELLADMSVKAYKDCVSRARNEKEKKECEKLLTPEARK--KLEQQ----V-------L
DCLKNAKTDEERKKCLKNL--P---KDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEARK--LLEEE----AKESVKAYL

TAPAS results:

tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,structured domain,CATH,267,296,1.10.880.10/FF/719
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,structured domain,CATH,410,452,1.20.5.620/FF/543
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,transmembrane region,TMHMM,46,68
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,disordered region,IUPred,1,27
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,disordered region,BISMMpredictor,1,28
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,1,36,PF14585.7
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,176,201,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,215,239,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,256,287,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,288,318,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,325,356,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,357,387,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,394,424,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,433,463,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,471,501,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,503,533,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,541,570,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,functional domain,PFAM,572,602,PF07337.12
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,consensus ordered region,TAPASS,29,617
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,consensus disordered region,TAPASS,1,28
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,7,14,MOD_GSK3_1
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,11,17,MOD_PIKK_1
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,17,23,LIG_FHA_2
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,1,4,LIG_BIR_II_1
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,7,14,MOD_SUMO_rev_2
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,eukaryotic SLiMs,ELM,22,26,MOD_SUMO_rev_2
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,amyloidogenic region,Pasta,44,71
tr_M3LCL2GN=HMPREF1394_01765_PE=4_SV=1,amyloidogenic region,Tango,46,63

Alphafold results - spectrum b

_images/M3LCL2alphafold.png

Alphafold results - units from MRF

_images/M3LCL2alphafoldUnits.png

AlphaFold results M3LCL2

PF12789 - Phage tail repeat like

PF12789 Protein family information

A complete search has been done using H[T|S|G]H Motif all the retrieved information is in here

A2GID0

A2GID0 Interpro sequence information

Sequence:

>tr|A2GID0|A2GID0_TRIVA Phage tail fiber repeat family protein OS=Trichomonas vaginalis G3 OX=412133 GN=TVAG_471250 PE=4 SV=1
MSNETASMREIQHNRQLIMQALNKNTTNFSNYSKISETLKDGNLKLTLNPITDEFLFQDN
KNNTVCINPTKGTLNEKPINELLLKADVDNKADKEYVDDAIAKEEERANNAYATKEHTHP
ELADKTYVDNKMSSEVTRAENEYSKKTHIHYINQIPSLKETLETKADKTHTHSISDITNL
QETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSI
SDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDV
EHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETLNRKSDVEHTHSISDITNLQETL
NRKSDVGHTHTSSEITDLNVSLENKADKTYVNEIYQSLIGTKILKLLLVTFLSMKKINIL
DGSWYSP

MRF results:

Region 1: 53-140, 31 aa length,3 units, TRUST 0.56
DEFLFQ---DNK-NNTVCINPTKGTLNEKPI
NELLLKADVDNK-ADKEYVDDAIAKEEERAN
NAYATKEHTHPELADKTYVDNKMSSEVTRAE

Region 2: 159-378, 22 aa length, 10 units, TRUST 1.0
KETLETKADKTHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVEHTHSISDITNL
QETLNRKSDVGHTHTSSEITDL

TAPAS results:

tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,structured domain,CATH,120,408,3.80.10.10/FF/343
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,1,20
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,30,34
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,66,72
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,78,85
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,IUPred,94,378
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,66,81
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,156,176
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,178,198
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,200,220
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,222,242
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,244,264
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,266,286
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,288,308
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,310,330
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,332,352
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,disordered region,BISMMpredictor,354,377
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,142,201,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,191,245,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,232,289,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,279,333,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,functional domain,PFAM,324,377,PF12789.8
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus ordered region,TAPASS,35,65
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus ordered region,TAPASS,120,426
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus disordered region,TAPASS,1,34
tr_A2GID0_OX=412133_GN=TVAG_471250_PE=4_SV=1,consensus disordered region,TAPASS,66,119

Alphafold results - spectrum b

_images/A2GID0alphafold.png

Alphafold results - units from MRF

_images/A2GID0alphafoldUnits.png

Alphafold results - trimer

_images/A2GID0alphafoldtrimer.png _images/A2GID0trimer.png

Alphafold results A2GID0

Alphafold results trimer A2GID0

A3XEN5

PFAM Repeat region 103-158

A3XEN5 Interpro sequence information

Sequence:

>tr|A3XEN5|A3XEN5_9RHOB Prophage MuMc02, head decoration protein, putative OS=Roseobacter sp. MED193 OX=314262 GN=MED193_12628 PE=4 SV=1
MANTIQLKRRVSGNAGAPAALKSGEVAHNEVDDTLYIGKGDDGGGNATSIVAIAGSGGFV
AKTGTQTIAGKKTFSLVPTASQDAAAGSDLVRKSQLDTLLGGKANTSHSHAIADVTGLQG
ALDGKAAVSHDHTAAEISDSTSAGRTLLKAADVAAQHTALGLGTAALMSSTAFAAAAHGH
AISDVSGLQTALNGKAPLASPSFTGTPAAPTAAGGTNTTQIATTAFVQSAIASFGAGDML
KATYDSDNDGKVDAAELADAVAWTGVTGKPATFPPSAHNHPISQVTGLQSALDAKAPKVS
PTFTGTPTAPTAAGGTSNTQIATTAFVSAAIAALIDAAPGAMDTLNELAAALGDDPDFAT
TVTNGLAGKLEKTSNLSDLTNAATARSNLGLGSMATQAANNVAITGGSISGIALDGGTF

MRF results:

Region 1: 16-380, 109 aa length,5 units, TRUST 0.99
GAPAA-LKS-GEVAHNEVDDTLYIGKGD-----D-----------------GG---GNATSIVA----------IAGS--GGF--VAK-T-GTQT-IAGKK-----TFS
LVPTASQDAAAGSDLVRKSQ---LDTLL-----G-----------------GK---AN-------------------TSHSHA--IADVT-GLQGALDGKAA-VSHDHT
AAEIS-DSTSAGRTLLKAADVAAQHTAL-----GL----------------GT---AALMSSTA----------FAAAAHGHA--ISDVS-GLQTALNGKAPLASPSFT
GTPAA-PTAAGGTNTTQIATTAFVQSAI-----ASFGAGDMLKATYDSDNDGKVDAAELADAVAWTGVTGKPATFPPSAHNHP--ISQVT-GLQSALDAKAPKVSPTFT
GTPTA-PTAAGGTSNTQIATTAFVSAAIAALIDA-----------------AP---GAMDTLNE----------LAAALGDDPDFATTVTNGLAGKLE-KTSNLS-DLT

TAPAS results:

tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  16      24
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  32      35
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  129     136
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  199     219
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  268     291
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  296     317
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       disordered region       IUPred  362     365
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       functional domain       PFAM    103     158     PF12789.8
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus ordered region        TAPASS  36      267
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus ordered region        TAPASS  318     418
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus disordered region     TAPASS  1       35
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       consensus disordered region     TAPASS  268     317
tr_A3XEN5_OS=Roseobacter_sp._MED193_OX=314262_GN=MED193_12628_PE=4_SV=1       eukaryotic SLiMs        ELM     9       15      MOD_PKA_1
_images/A3XEN5tapass.jpg

Alphafold results - spectrum b

_images/A3XEN5alphafold.png

Alphafold results - units from MRF

_images/A3XEN5alphafoldUnits.png

Alphafold results - trimer

_images/A3XEN5alphafoldtrimer.png _images/A3XEN5alphafoldtrimerUnits.png

Alphafold results A3XEN5

Alphafold results trimer A3XEN5

PF07918 - CAP160 repeat

PF07918 Protein family information

A0A3Q0F5B8

A0A3Q0F5B8 Interpro sequence information

Sequence:

>tr|A0A3Q0F5B8|A0A3Q0F5B8_VIGRR Uncharacterized protein LOC106762671 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106762671 PE=4 SV=1
MDSRAVQTQGHKYDQHHRNPHNVGSQGVAHGDEHNQHDHEKKTVMKKVKQKAKKIKDSIT
KHGHHDHERGHEYHNEDQHIPDDHDLDEEDDEDVDHPVHGAPIYDSAPGRGAARRQVDAI
GKSGVNLGGIAVMGGEPHQEPRVVVVSPTTGVNQSGVAEPTMTFIEVEKVVHTKVNLEEQ
IHLEEDPHAPRRAHAPPNHQTKVKNPTGAGGADIDVTPVEKSFSRMTILYEPNQEPPNLS
PTVTETHHSSAGRNSQIAPELSSATNYPSIQSHGQYKPELSGEVKTKYPNSHGQFSPVLS
KPTKTHYPEAQSHDQYLPQQSSATKTQYPSSGRSHDQFTPVSSTGHNIHHPSTKFHGQHL
PQQSNTTKTQYPSSGGHDQFTPVSSTGPNIQHPSTKIHDQHLPQQFGATKTQYPSSGSHD
QFTPVSSTEPNIQHPSTNFHDQHLPQQFSATKTHSPSSGSHDQYTPMSSTRPNIQHPSTK
IHDQHLPQQFSATNTHSPSSGSHDQFPPVSSTGPNIQHPSTKIHDQHLPQQLNATKTPYP
SSRSHDQFTPVASTEPNMQHSSTRTHDQHLLQQFDETKHRYPSTGRHVQFTPEFSTQPNV
QSHYTKTHDQYPSSVNHDQYPSTAIHDRHLPQQSSQGTKNTQYPSSGNHDQFLPEFSTQT
RTPQAYNTTDIEESQYGSMEKPSNESSYTDKISSPTASIADTAVTAKNAVASKLGYGHRN
ETEATRAKMQENISNEEPSTVTLATAAIADKAVAAKNTVASKLGYGADTETTRAKMQENI
SNEEPSTVTLATAAIADKAVAAKNTVASKLGYGADTETTQTNTSSERPSTISSATSAIAD
KAVTAKNTVASKLGYGPETTHQEEKQSAISSATSAIADKAVTAKNTVASKLGYGPKTTHR
EEEKPSTISAATSAIADKAVNAKNTVASKLGYGPETTRREEEKQSTISAATSAIADKAVT
AKNTVASKLGYGPETTQREEQKPSAISSATSAIADTAVSAKNTVASKLGYGADTETVQAK
HHEEKPSTVSAATSAIANKAASAKNTVASKLGYGANTETTQTKNYQENTSNEQPSTISLA
TSAVADKAISAKNTVASKLGFGDTTTAHEEKRRDHAAAPTEYGKSVAQSLTENLGPVYGK
SGVKSNVSGENASVVVEQDKGVSMRDYLADKLRPTPEDRALSEVISETLHKKEPVEVNEE
GNKGVKRVISDAVHKREDDPEGRVDQQIPVWKVTESEEVKRRLGSEDEETERRYQELYVK
SPGTGVVDKLMGMVGSLITNPVENESLQDSSTTNYGTEVEHLRQGGTERRLQESSN

MRF results:

 Region 1: 317-611     ,43 aa length,  7 units
 LPQQSSATKTQYPSSGRSHDQFTPVSSTGHNIHHPSTKFHGQH
 LPQQSNTTKTQYPSSGG-HDQFTPVSSTGPNIQHPSTKIHDQH
 LPQQFGATKTQYPSSGS-HDQFTPVSSTEPNIQHPSTNFHDQH
 LPQQFSATKTHSPSSGS-HDQYTPMSSTRPNIQHPSTKIHDQH
 LPQQFSATNTHSPSSGS-HDQFPPVSSTGPNIQHPSTKIHDQH
 LPQQLNATKTPYPSSRS-HDQFTPVASTEPNMQHSSTRTHDQH
 LLQQFDETKHRYPSTGR-HVQFTPEFSTQPNVQSHYTKTHDQY


Region 2:      791-1194        ,  51   aa length,10 units

 ATAAIADKAVAAKNTVASKLGYGADTETTQT-----NTSSERPSTISS---
 ATSAIADKAVTAKNTVASKLGYGPET----------THQEEKQSAISS---
 ATSAIADKAVTAKNTVASKLGYGPKT----T-----HREEEKPSTISA---
 ATSAIADKAVNAKNTVASKLGYGPET----T-----RREEEKQSTISA---
 ATSAIADKAVTAKNTVASKLGYGPET----T-----QREEQKPSAISS---
 ATSAIADTAVSAKNTVASKLGYGADTETVQA-----KHHEEKPSTVSA---
 ATSAIANKAASAKNTVASKLGYGANTETTQTKNYQENTSNEQPSTISL---
 ATSAVADKAISAKNTVASKLGFGDTT----T-----AHEEKRRDHAAAPTE
 -------YGKSVAQSLTENLGPVYGKSGVKS-----NVSGENASVV-----
 ---VEQDKGVSMRDYLADKLRPTPED----R-----ALSEVISETLHKKEP

TAPAS results:

Alphafold results - spectrum b

_images/A0A3Q0F5B8_cutted_alphafold.png

Alphafold results - units from MRF

_images/A0A3Q0F5B8_cutted_alphafoldUnits.png

Alpha fold results A0A3Q0F5B8

PF07276 - Apopolysialoglycoprotein (PSGP)

PF07276 Protein family information

P12027

Interpro sequence information P12027

Sequence:

>sp|P12027|PSGP_ONCMY Polysialoglycoprotein OS=Oncorhynchus mykiss OX=8022 PE=1 SV=2
MIMGGVRELLLVVMTVGVVKVSCYPVGKSQKQDQVSLQRRLGELSSNDVSIVHALALLRS
IGSDAKQAREEYLETNEVESQASPNHGSSPANDALSSEEKLRRVSSDDAATSEAATGPSG
DDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAA
TGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDA
TSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGP
SGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSE
AATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGD
DATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAAT
GPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDATSEAATGPSGDDAM
DI

MRF results:

Region 1: 107-536,    14 aa length,   33  units
DDAATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG
DD-ATSEAATGPSG

TAPAS results:

_images/tapasP12027.png

Alphafold results - spectrum b

_images/P12027alphafold.png

Alphafold results - units from MRF

_images/P12027alphafoldUnits.png