PF02095 - Extensin-like protein repeat

PF02095 Protein family information

G2ZF64

PFAM Repeat regions: 555-562, 715-722, 872-879, 1029-1036

G2ZF64 Interpro sequence information

Sequence:

>tr|G2ZF64|G2ZF64_LISIP Putative internalin B (Ivanovii) OS=Listeria ivanovii (strain ATCC BAA-678 / PAM 55) OX=881621 GN=i-inlB PE=3 SV=1
MREKNWLQGVLIITLLTMIVACISMDFKTKVRAASISQPMPINKLFPDPGLSETIAETLS
KKNITDVVSQQELSSIDELYADESWIKSIKGVQYLSNLRKIFFQKNQIKDISDLASLIKL
EEVRLNGNQISDISALANLSKLNVLDLSNNQIKDIDALSNLVKLKSLNLDDNQLTDISKL
ESLTALKELFFTGNQITDIRVLSKLTNLTELVFNKNQVTNIAALSKLTNLTALGFRENNV
KDIAPLVKLVKLTTLAFSQNQVKDISVLETLDILVYLAFDGNQVKDISVLAKLNHLAYLV
FDDNQVTNIDALAKLPNLIGVMFNDNRVRNMSPLANLTKLEKLHAEGNYIQDVKALSSLT
KLKELKLDRNCIVDISPLAGLNNLDELELSNQIFTNSTIGYQENLTISNIIKDRAGELIV
PDTISDNGTYKKPNISWNIPTLKKEVSYDFELYVIIGQAGSYFSGKVIQPLNKLDTIEYN
KAINAYGRVKSGVKSAIWSHPYRTKDAKQIGTLSVYAGKNLRILQEAKTTSGTYYQIRVG
KKTIGWVEAKNIAFFYKPSMEKKANGVRYIAPGKESQHVYKLPVIDAAIDEGTLAKFKGK
KLTLQREVTIEKEKWMLLQGIGWVKATNLSTEHYDKVLYNKAITAYARVKIAKGKQVWST
PYRTAGYKVIGSLSRYNGKNLRILREAKTRSGIYYQVRVGKKTIGWVEAKNITVFYKPSM
EKKANGVRYIAPGKESQHVYKLPVVDAAIDGGTLAKFKGKKLTLQREAIIGKEKWVLLQG
VGWVKATNVSALRYDKVFYNKTVTAYARVKTVMVWSNPYRNAGNKAIGSLSRYTGKNLRI
LREAKTRSGVYYQVRAGKKMIGWIEAKNLTVFYKPSMEKKVKGTRYIVPGKEGQHVYKLP
VADAAIDGGTLARFKGKKLTLQREVTIGKEKWVRLQGVGWVKATNVSALRYDKVFYNKAV
IAYAKVKTPMVWSTPYRTAGYKAVGPLLHYTSKNLRILREAKTRSGVYYQVRVGKKTIGW
LEAKNLAVFYKPSMEKKAAGTCYVVARKKNNLYYSLPVADGTISRGKLQKISRKNLTVNR
KATIGGQQWYRIKGAGWTKAANLRLKR

MRF results:

Region 1: 417-1054, 164 aa length,4 units, TRUST 1.0
ELIVPDTISDNGTYKKPNISWNIPTLKKEVSYDFELYVIIGQAGSYFSGKVIQPLNKLDTIEYNKAINAYGRVKSGVKSAIWSHPYRTKDAKQIGTLSVYAGKNLR
ILQEAKTTSGTYYQIRVGKKTIGWVEAKNIAFFYKPSMEKKANGVRYIAPGKESQHVY
KLPVIDAAIDEGTLAK--FKGKKLTLQREVTIEKEKWMLL-QGIGWVKATNLSTEHYDKVLYNKAITAYARVKIAKGKQVWSTPYRTAGYKVIGSLSRYNGKNLR
ILREAKTRSGIYYQVRVGKKTIGWVEAKNITVFYKPSMEKKANGVRYIAPGKESQHVY
KLPVVDAAIDGGTLAK--FKGKKLTLQREAIIGKEKWVLL-QGVGWVKATNVS-ALRYDKVFYNKTVTAYARVKTV---MVWSNPYRNAGNKAIGSLSRYTGKNLR
ILREAKTRSGVYYQVRAGKKMIGWIEAKNLTVFYKPSMEKKVKGTRYIVPGKEGQHVY
KLPVADAAIDGGTLAR--FKGKKLTLQREVTIGKEKWVRL-QGVGWVKATNVS-ALRYDKVFYNKAVIAYAKVKTP---MVWSTPYRTAGYKAVGPLLHYTSKNLR
ILREAKTRSGVYYQVRVGKKTIGWLEAKNLAVFYKPSMEKKAAGTCYVVARKKNNLYY


Region 2: 103-388, 22 aa length,13 units, TRUST 1.0
FQKNQIKDISDLASLIKLEEVR
LNGNQISDISALANLSKLNVLD
LSNNQIKDIDALSNLVKLKSLN
LDDNQLTDISKLESLTALKELF
FTGNQITDIRVLSKLTNLTELV
FNKNQVTNIAALSKLTNLTALG
FRENNVKDIAPLVKLVKLTTLA
FSQNQVKDISVLETLDILVYLA
FDGNQVKDISVLAKLNHLAYLV
FDDNQVTNIDALAKLPNLIGVM
FNDNRVRNMSPLANLTKLEKLH
AEGNYIQDVKALSSLTKLKELK
LDRNCIVDISPLAGLNNLDELE

Region 3: 202-210, 3 aa length,3 units, regex_LX3 0.75
LSK
LTN
LTE

Region 4: 224-232, 3 aa length,3 units, regex_LX3 0.52
LSK
LTN
LTA

Region 5: 246-254, 3 aa length,3 units, regex_LX3 0.69
LVK
LVK
LTT

TAPAS results:

protein_ID,prediction_type,prediction_tool,first_residue_involved,last_residue_involved,accession
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,30,246,3.80.10.10/FF/343
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,247,315,3.80.10.10/FF/55878
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,316,400,3.80.10.10/FF/106677
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,401,473,2.60.40.1220/FF/1645
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,476,554,2.30.30.170/FF/83
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,638,714,2.30.30.170/FF/83
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,799,871,2.30.30.170/FF/83
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,structured domain,CATH,953,1029,2.30.30.170/FF/83
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,transmembrane region,TMHMM,5,27
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,disordered region,BISMMpredictor,420,436
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,1,56,PF12354.9
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,110,221,PF14580.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,228,269,PF12799.8
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,339,391,PF13855.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,416,471,PF08191.12
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,480,552,PF13457.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,640,712,PF13457.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,800,869,PF13457.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,958,1026,PF13457.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,functional domain,PFAM,1041,1103,PF13457.7
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,consensus ordered region,TAPASS,1,1107
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,5,33
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,126,147
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,274,308
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,389,411
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,446,469
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,509,539
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,ArchCandy2,769,800
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Pasta,5,27
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,6,25
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,114,118
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,189,193
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,254,256
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,273,279
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,296,301
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,318,323
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,452,457
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,552,556
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,615,615
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,712,716
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,775,784
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,811,815
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,864,864
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,869,873
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,959,964
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,1026,1030
tr_G2ZF64OX=881621_GN=i_inlB_PE=3_SV=1,amyloidogenic region,Tango,1042,1045
_images/G2ZF64tapass.jpg

Alphafold results - spectrum b

_images/G2ZF64alphafold.png

Alphafold results - units from MRF

_images/G2ZF64alphafoldUnits.png

Alpha fold results G2ZF64

A0A6L8E336

PFAM repeat region: 36-44, 46-54, 56-64, 66-74

A0A6L8E336 Interpro sequence information

Sequence:

>tr|A0A6L8E336|A0A6L8E336_9BACT OMP_b-brl domain-containing protein OS=Acidobacteria bacterium OX=1978231 GN=F4137_23060 PE=4 SV=1
MPAQRTRTRPAAQVLAAAFLLAAVGAAAQEPPEQQPTEKPSAEQQPAEKPSAEQQPAEKP
STEQQPIEKPPVEQPPSAERQPAEQPSAEQPPVEQPLAERTRIVSVNFGMQFIQDAFMNR
VTFQQHDETGSFESHYDVTKHHALDGGIAFRLWRNLALGFVGSHVAEPTTARVDAQVPHP
HFFGFSRPASGVRRGLNRREIGLHVQGQYWWFVNETFLLRATWGPTIFIARQDLVSQIDT
REASDDFDQVMLTGHRSRTVTAGSLGLNLGFDGTWLLTERVGVGFGVRYSRGTATVRLGG
RSATPLELGGTHAGGGLRLAF

MRF results:

Region 1: 28-92,10 aa length,7 units,TRUST 0.91
AQEPP-EQQP
TEKPSAEQQP
AEKPSAEQQP
AEKPSTEQQP
IEKPPVEQ-P
---PSAERQP
AEQPSAEQPP

TAPAS results:

tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,peptide signal,SignalP,1,2
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,disordered region,IUPred,29,101
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,disordered region,IUPred,123,138
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,disordered region,BISMMpredictor,29,97
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,disordered region,BISMMpredictor,122,137
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,consensus ordered region,TAPASS,1,28
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,consensus ordered region,TAPASS,139,321
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,consensus disordered region,TAPASS,29,138
tr_A0A6L8E336OX=1978231_GN=F4137_23060_PE=4_SV=1,eukaryotic SLiMs,ELM,100,103,TRG_ER_diArg_1
_images/A0A6L8E336tapass.jpg

Alphafold results - spectrum b

_images/A0A6L8E336alphafold.png

Alphafold results - units from MRF

_images/A0A6L8E336alphafoldUnits.png

Alpha fold results A0A6L8E336

P16329

PFAM repeat regions: 1-9, 28-37,33-42,55-64,60-68, 71-80

P16329 Interpro sequence information

Sequence:

>sp|P16329|NO75_PEA Early nodulin-75 (Fragment) OS=Pisum sativum OX=3888 GN=ENOD2 PE=2 SV=1
PPHEKPPHENTPPEYQPPHEKPPHEHPPPEYQPPHEKPPHEKPSPKYQPPHEHSPPEYQP
PHEKPPHENPPPVYKPPYENSPPPHVYHRPLFQAPPPVKPSRPFGPFPAFKN

MRF results:

Region 1: 1-69,6 aa length,13 units, T-REKS 0.9

PPHEK-
PPHENT
-PPEYQ
PPHEK-
PPHEH-
PPPEYQ
PPHEK-
PPHEK-
PSPKYQ
PPHEHS
-PPEYQ
PPHEK-
PPHEN-

TAPAS results:

sp_P16329_NO75_PEA_Early_nodulin_75_Fragment_OS=Pisum_sativum_OX=3888_GN=ENOD2_PE=2_SV=1,disordered region,IUPred,1,112,
sp_P16329_NO75_PEA_Early_nodulin_75_Fragment_OS=Pisum_sativum_OX=3888_GN=ENOD2_PE=2_SV=1,disordered region,BISMMpredictor,1,80,
sp_P16329_NO75_PEA_Early_nodulin_75_Fragment_OS=Pisum_sativum_OX=3888_GN=ENOD2_PE=2_SV=1,disordered region,BISMMpredictor,92,111,
sp_P16329_NO75_PEA_Early_nodulin_75_Fragment_OS=Pisum_sativum_OX=3888_GN=ENOD2_PE=2_SV=1,consensus disordered region,TAPASS,1,112,

Alphafold results - spectrum b

_images/P16329alphafold.png

Alphafold results - units from MRF

_images/P16329alphafoldUnits.png

Alpha fold results P16329