PF02162 - XYPPX repeat (two copies)

PF02162 Protein family information

P24603

PFAM repeat region: 289-402, 404-416, 417-428

P24603 Interpro sequence information

Sequence:

>sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesii OX=6618 GN=RHO PE=2 SV=1
MGRDIPDNETWWYNPYMDIHPHWKQFDQVPAAVYYSLGIFIAICGIIGCVGNGVVIYLFT
KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFMKYWVFGNAACKVYGLIGGIFGL
MSIMTMTMISIDRYNVIGRPMSASKKMSHRKAFIMIIFVWIWSTIWAIGPIFGWGAYTLE
GVLCNCSFDYITRDTTTRSNILCMYIFAFMCPIVVIFFCYFNIVMSVSNHEKEMAAMAKR
LNAKELRKAQAGANAEMKLAKISIVIVTQFLLSWSPYAVVALLAQFGPIEWVTPYAAQLP
VMFAKASAIHNPMIYSVSHPKFRERIASNFPWILTCCQYDEKEIEDDKDAEAEIPAGEQS
GGETADAAQMKEMMAMMQKMQAQQQQQPAYPPQGYPPQGYPPPPPQGYPPQGYPPQGYPP
QGYPPPPQGPPPQGPPPQAAPPQGVDNQAYQA

MRF results:

Region 1: 393-402,5 aa length, 2 units, TRUST 0.98
QGYPP
QGYPP
Region 2: 428-437,5 aa length, 2 units, TRUST 0.93
QGPPP
QGPPP
Region 3: 406-425,5 aa length, 4 units, TRUST 1.0
QGYPP
QGYPP
QGYPP
QGYPP

TAPAS results:

sp_P24603GN=RHO_PE=2_SV=1,structured domain,CATH,15,116,1.20.1070.10/FF/41886
sp_P24603GN=RHO_PE=2_SV=1,structured domain,CATH,141,355,1.20.1070.10/FF/44907
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,37,59
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,72,94
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,109,131
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,152,174
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,202,224
sp_P24603GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,262,284
sp_P24603GN=RHO_PE=2_SV=1,disordered region,IUPred,343,452
sp_P24603GN=RHO_PE=2_SV=1,disordered region,BISMMpredictor,334,351
sp_P24603GN=RHO_PE=2_SV=1,disordered region,BISMMpredictor,385,445
sp_P24603GN=RHO_PE=2_SV=1,functional domain,PFAM,51,315,PF00001.22
sp_P24603GN=RHO_PE=2_SV=1,consensus ordered region,TAPASS,1,355
sp_P24603GN=RHO_PE=2_SV=1,consensus disordered region,TAPASS,35
_images/P24603tapass.jpg

Alphafold results - spectrum b

_images/P24603alphafold.png

Alphafold results - units from MRF

_images/P24603alphafoldUnits.png

Alpha fold results P24603

A0A7R8AL04

PFAM repeat region 17-33

A0A7R8AL04 Interpro sequence information

Sequence:

>tr|A0A7R8AL04|A0A7R8AL04_9EURO Vesicular-fusion protein SEC18 OS=Aspergillus puulaauensis OX=1220207 GN=SEC18 PE=3 SV=1
MFGGRSPFGSNNPQREGYSRPPQGYPPQGYPPQQGAPGYGSPSPRQPAPGGRPLPQAPMG
GRPSEGGWRLKVMENADKGYQFRNFVALSTQDFPRAQFGQEDILIIVNNRNVFTARPADG
FPPGYIGLSGVQRPWAGAGLRDELLIQIYDPFRQGGEAYLGSADIEVRFAGKSRTDELYD
QDDLAASVIKNFESQLFAPGQPVLMDHRGIPLQLRVKTILRVSLTSEKETSKEPETDPTA
RGILTKHTMINFFKDPESNIQIKPAKNRPAANAIIQPDFNTEKMGIGGLDSEFHTIFRRA
FASRIFPPDIVQKLGIQHVKGILLFGPPGTGKTLLARQIGKMLNAKEPKIINGPEVLNKF
VGQSEENIRKLFADAEREYKEKGDESELHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQ
LLSKMDGVDQLNNILLIGMTNRKDMIDDALLRPGRLEVHVEISLPDEAGRAQILGIHTQN
MSQSDLLDPSVDVAELASLTKNYSGAEIAGLVKAATSFAFNRHIDSGKTVRVKDDAAEMK
VNHSDFIHALDEIQPAYGVSEDEIKRCIEHGIITYSEKIGGVLKDGEALAKGLGHPDQTP
LWSVLFNGPPGSGKTALAAQIALDSGAPFIKMICPEDIAGFSEQAKIQHILRVFNDAYKS
QTSVVVVDDIETIIDYVSVGPRFSNSVLQTLKVLFKKRPPKNRRLLVLATTSQRALMKEL
NIYTSFNSDIDVPNVTSHEELNHVMAKSGVFTNEQIAEALARIDTLKGETAYSITFGVGI
KKVFDGIELAKKTPTELVNQFVRFVNSAVQEGALATRGPRVQAAEEFEFS

MRF results:

Region 1: 316-801, 305 aa length, 2 units, TRUST 0.52
IQHVKG------------------------------------------------------------------------------ILLFGPPGTGKTLLARQIGKMLNAKEP--KIINGPEVLNKFVGQSE-     ENIRKLFADAEREYKEKGDESELHIIIFDELDAVCKQRGSGAGGGTGVGDSVVNQLLSKMDGVDQLNNILLIGMTNRKDMIDDALLRPGRLEVHV----EISLPDEAGRAQ---IL---GIHT-----QNMSQSDLL--DPSVDVAELASLTKNYSGAEIAGLVKAATSFA--F
NRHI-DSGKTVRVKDDAAEMKVNHSDFIHALDEIQPAYGVSEDEIKRCIEHGIITYSEKIGGVLKDGEALAKGLGHPDQTPLWSVLFNGPPGSGKTALAAQIA--LDSGAPFIKMIC-PEDIAGFSEQAKIQHILRVFNDA---YK-----SQTSVVVVDDIETIIDYVSVGPRFSNSVLQT-LKVLFKKRPPKNR--RLLVLATTSQR-----ALMK--ELNIYTSFNSDIDVPNVTSHEELNHVMAKSGVFTNEQIAEALARIDTLKGETAYSITFGVGIKKVFDGIELAK--KTPTELVNQF

Region 2: 21-35, 5 aa length, 3 units, T-REKS 0.92
PPQGY
PPQGY
PPQQG

TAPAS results:

sp_P24603_GN=RHO_PE=2_SV=1,structured domain,CATH,15,116,1.20.1070.10/FF/41886
sp_P24603_GN=RHO_PE=2_SV=1,structured domain,CATH,141,355,1.20.1070.10/FF/44907
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,37,59
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,72,94
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,109,131
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,152,174
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,202,224
sp_P24603_GN=RHO_PE=2_SV=1,transmembrane region,TMHMM,262,284
sp_P24603_GN=RHO_PE=2_SV=1,disordered region,IUPred,343,452
sp_P24603_GN=RHO_PE=2_SV=1,disordered region,BISMMpredictor,334,351
sp_P24603_GN=RHO_PE=2_SV=1,disordered region,BISMMpredictor,385,445
sp_P24603_GN=RHO_PE=2_SV=1,functional domain,PFAM,51,315,PF00001.22
sp_P24603_GN=RHO_PE=2_SV=1,consensus ordered region,TAPASS,1,355
sp_P24603_GN=RHO_PE=2_SV=1,consensus disordered region,TAPASS,356,452
_images/A0A7R8AL04tapass.jpg

Alphafold results - spectrum b

_images/A0A7R8AL04alphafold.png

Alphafold results - units from MRF

_images/A0A7R8AL04alphafoldUnits.png

Alpha fold results A0A7R8AL04