Welcome to PFAM using Alphafold
Introduction
This material was made to evaluate Alphafold models for a particular group of PFAM families.
Note
This document was created during a REFRACT secondment made by Layla Hirsh at Andrey Kajava’s laboratory This project is under active development.
What will you find here
Summary 1
- Summary 1
- PF00399 - Yeast PIR protein repeat
- PF00402 - Calponin family repeat
- PF00414 - Neuraxin and MAP1B repeat
- PF00624 - Flocculin repeat
- PF00880 - Nebulin repeat
- PF00904 - Involucrin repeat
- PF09528 - Ehrlichia_rpt
- PF10529 - Hist_rich_Ca-bd
- PF12778 - PXPV repeat (3 copies)
- PF14585 - CagY_I
- PF14912 - Testicular haploid expressed repeat
- PF15287 - KRBA1
- PF15788 - DUF4705
- PF18727 - ALMS_repeat
- PF02095 - Extensin-like protein repeat
- PF02218 - Repeat in HS1/Cortactin
- PF03057 - Repeat in HS1/Cortactin
- PF03991 - Copper binding octapeptide repeat
- PF04649 - Mycoplasma hyorhinis VlpA repeat
- PF04671 - Erythrocyte membrane-associated giant protein antigen 332
- PF03482 - sic protein repeat
Summary 2
Cases to review
- Cases To Reviewed
- PF00399 - Yeast PIR protein repeat
- PF00402 - Calponin family repeat
- PF00624 - Flocculin repeat
- PF00880 - Nebulin repeat
- PF00904 - Involucrin repeat
- PF02218 - Repeat in HS1/Cortactin
- PF03057 - DUF236 repeat
- PF03991 - Copper binding octapeptide repeat
- PF14585 - CagY type 1 repeat
- PF12789 - Phage tail repeat like
- PF07918 - CAP160 repeat
- PF07276 - Apopolysialoglycoprotein (PSGP)
Protein Families
- PF00399 - Yeast PIR protein repeat
- PF00402 - Calponin family repeat
- PF00414 - Neuraxin and MAP1B repeat
- PF00624 - Flocculin repeat
- PF00880 - Nebulin repeat
- PF00904 - Involucrin repeat
- PF02095 - Extensin-like protein repeat
- PF02162 - XYPPX repeat (two copies)
- PF02218 - Repeat in HS1/Cortactin
- PF03057 - DUF236 repeat
- PF03482 - sic protein repeat
- PF03516 - Filaggrin
- PF03991 - Copper binding octapeptide repeat
- PF04649 - Mycoplasma hyorhinis VlpA repeat
- PF04671 - Erythrocyte membrane-associated giant protein antigen 332
- PF04680 -
- PF04886 -
- PF05671 -
- PF06049 - Coagulation Factor V LSPD Repeat
- PF06392 - Acid shock protein repeat
- PF06671 -
- PF06740 -
- PF07004
- PF07016 -
- PF07122 -
- PF07142 -
- PF07276 - Apopolysialoglycoprotein (PSGP)
- PF07391 - NPR nonapeptide repeat (2 copies)
- PF07806 - Nod_GRP
- PF07918 - CAP160 repeat
- PF08043 -
- PF08061 -
- PF08062 -
- PF08065 -
- PF09528 - Ehrlichia tandem repeat (Ehrlichia_rpt)
- PF10529 - Histidine-rich Calcium-binding repeat region
- PF12135 -
- PF12778 - PXPV repeat (3 copies)
- PF12789 - Phage tail repeat like
- PF14585 - CagY type 1 repeat
- PF14912 -
- PF15287 - KRBA1 family repeat
- PF15788 -
- PF18727 - Alstrom syndrome repeat